Visit the organization
Open the public PhysioVerse-OSE organization to view repositories, project READMEs, updates, and contribution paths.
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GitHub
PhysioVerse GitHub
Explore public PhysioVerse repositories, project documentation, community contribution pathways, issue trackers, discussions, releases, and citation resources.
Public GitHub pathway
No code required to take part
The PhysioVerse GitHub organization connects website visitors with public projects for MPS data, standards, validation, reproducibility, protocols, community challenges, and open resources.
Pick a project
Use the contribution guide to choose a project by interest area, including data, standards, validation, reproducibility, and protocols.
Start contributingJoin discussions
Use PhysioVerse Discussions for introductions, ecosystem-wide questions, ideas, and topics that span multiple repositories.
Join discussionsUse the website pathway
Start on the PhysioVerse On-Ramp to choose the best path across data discovery, submission, tools, standards, and community pages.
Open On-RampFour ways to participate
Connect with the work that fits your expertise
Visitors can use GitHub to discover public resources, review working drafts, contribute evidence, and join focused community activities.
Find and connect public MPS datasets, protocols, references, and reusable resources.
Open MPS Data CommonsShape shared metadata, descriptors, assays, endpoints, and experimental reporting guidance.
Open metadata projectBuild fit-for-purpose validation, benchmarking, reference-resource, and reproducibility evidence.
Open validation projectUse structured GitHub issues, community reviews, and discussions to contribute without needing to write code.
Open guideFeatured entry points
Start from a high-value project
These entry points connect directly to active contribution or exploration paths in the public GitHub organization.
MPS Data Commons
Community-curated discovery of public MPS datasets, accessions, DOIs, repository links, and related reusable resources.
Contribute a datasetMPS Minimum Metadata Standard
A practical working draft for the minimum information needed to understand, compare, and reuse MPS data.
Suggest metadataMPS Validation Framework
A community space for fit-for-purpose validation evidence, reporting considerations, and performance measures.
Contribute evidenceToward Standardization
Reference-anchored benchmarking for evaluating biological fidelity of advanced in vitro models.
Explore resourceActive projects
PhysioVerse GitHub project table
This table mirrors the public project organization and links each project to its repository or contribution pathway.
| Type | Project | What it is building | How the community can contribute | Action |
|---|---|---|---|---|
| Open resource | Toward Standardization | Reference-anchored benchmarking for evaluating biological fidelity of advanced in vitro models. | Review methodology, nominate benchmark datasets, suggest reference standards. | Explore |
| Data | MPS Data Commons | Community-curated discovery of public MPS datasets. | Nominate datasets, add accessions or DOIs, correct records, identify missing datasets. | Contribute |
| Standards | MPS Minimum Metadata Standard | Practical community working draft for minimum information needed to understand and reuse MPS data. | Propose fields, review requirements, share examples, identify existing standards. | Contribute |
| Standards | MPS Model & System Descriptors | Shared terminology and descriptors for organoids, tissue chips, OTEs, organ-on-chip, body-on-chip, and related systems. | Propose definitions, flag ambiguous terms, review descriptors, suggest ontology mappings. | Contribute |
| Standards | MPS Experimental Conditions Standard | Reporting framework for experimental conditions that affect interpretation and reproducibility. | Suggest fields for flow, media, dose, timing, materials, environment, and stimulation. | Contribute |
| Standards | MPS Assay & Endpoint Dictionary | Shared definitions for assays, biological endpoints, units, and measurement context. | Nominate assays and endpoints, refine definitions, suggest units, provide public examples. | Contribute |
| Benchmarking | MPS Reference Atlas | Community nominations and evaluation of biological reference datasets for MPS benchmarking. | Nominate reference datasets, review suitability, identify limitations, propose selection criteria. | Contribute |
| Validation | MPS Validation Framework | Fit-for-purpose validation evidence and reporting considerations for MPS applications. | Propose criteria, share validation studies, review evidence, suggest performance measures. | Contribute |
| Reproducibility | MPS Reproducibility Commons | Public evidence on cross-laboratory reproducibility, variability, and robustness. | Share studies, nominate benchmark datasets, report variability factors, suggest metrics. | Contribute |
| Multimodal data | MPS Multimodal Data Standard | Working approach for linking omics, imaging, histology, video, functional, and sensor data. | Share multimodal examples, propose linkage identifiers, define modality-specific metadata. | Contribute |
| Protocols | MPS Protocol Commons | Community discovery and organization of public MPS protocols and SOP references. | Nominate protocols, connect protocols to datasets and publications, identify metadata and gaps. | Contribute |
| Community action | MPS Community Challenges | Short, focused collaborative efforts around priority MPS data, standards, validation, and curation needs. | Propose a challenge, join active work, contribute evidence, help define deliverables. | Contribute |
Repository information
What visitors can find on GitHub
Repository pages provide structured entry points for public project information, documentation, issue-based feedback, discussions, releases, and citation details when available.
Repository READMEs
Project pages summarize scope, resources, current work, and practical next steps.
Issue-based contribution
Issues collect dataset nominations, metadata suggestions, documentation requests, examples, and project feedback.
Discussions
Discussions support introductions, broad questions, project ideas, and community conversations across repositories.
Releases and citation
Repository releases and citation files help visitors reference stable versions of selected public resources.
GitHub organization
Build PhysioVerse with the MPS community
Contribute data, improve standards, share evidence, review public resources, and strengthen reproducibility through the public GitHub organization.
